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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaaaataatggaaattacaactttcttgtgatcctggaaaaattaacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG

Basic information

species Glycine max
transcript GLYMA19G36140.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36140.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 3'ss of exon 8
--taa-aaaataatggaaatt-acaactt---tcttgtgatcctggaaaaattaacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG
  ||  | | || |  ||||| ||    |   | |  | |   |||||    |  || | | |  |||| ||       | | |   | | |  |||| | ||||||||||||||||| |||||||| || ||||| || |||||||| |   ||| ||| ||||  |||||| |||||||||| ||||| |||||||| |||||
attattagagtagtctaaattgacggaatgcatttcctaaagatggaagccgtttcaaaatttatttcagca-------tttctcagtctagaaaattgtttctcagGTGACATATAATACACTTCTTAAAGCACGAAGCAAATATGGTTCTTTACTTGAAGTGCGGCAATGCTTGGCTATATATCAGGACATGCGAAATGCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902238|gb|BE611206.1|BE611206
EST:     CATTAACATTATATGAAGAAATGAAATGCTACCAGATACGTCCAAATTGG                         GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACAT
genomic: CATTAACATTATATGAAGAAATGAAATGCTACCAGATACGTCCAAATTGGgtgagtgcct ... tatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACAT
EST: gi|7796307|gb|AW781704.1|AW781704
EST:     GAAATGCTACCAGATACGTCCAAATTGG                         GTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACAT
genomic: GAAATGCTACCAGATACGTCCAAATTGGgtgagtgcct ... tatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGG
                                            ttatctctc  CT-rich tract
                           tctattgattttgtta  TA-rich tract