1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatttccaaaacacacgcaacttagaagtgccatcaaatgcatttatcatactgacttgacacatgttctgataatgttttgcagGATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTTGGCAATAGAGACACGGATGAACTCAGTTACAGGAAGATAGGAATCCCGA
species | Glycine max |
transcript | GLYMA19G35930.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAATAAGAAGGGCACCTCATGAGTTCAAGATTGCTTGTCTAGAG GATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTTEST: gi|51337200|gb|CO981066.1|CO981066
genomic: TAATAAGAAGGGCACCTCATGAGTTCAAGATTGCTTGTCTAGAGgtaatttcca ... tgttttgcagGATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTT
EST: TAATAAGAAGGGCACCTCATGAGTTCAAGATTGCTTGTCTAGAG GATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTTEST: gi|11412625|gb|BF424636.1|BF424636
genomic: TAATAAGAAGGGCACCTCATGAGTTCAAGATTGCTTGTCTAGAGgtaatttcca ... tgttttgcagGATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTT
EST: TAATAAGAAGGGCACCTCATGAGTTCAAGATTGCTTGTCTAGAG GATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTT
genomic: TAATAAGAAGGGCACCTCATGAGTTCAAGATTGCTTGTCTAGAGgtaatttcca ... tgttttgcagGATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTT
ccatcaaatgcatttatcatactgacttgacacatgttctgataatgttttgcagGATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTTGGCAATAGAGACACGGATGAACTCAGTTACAGGAAGATAGGAATCCCGA
atttatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttccaaaacacacgcaacttagaagtgccatcaaatgcatttatcatactgacttgacacatgttctgataatgttttgcagGATATCAGAAGACTTTTCCCTTCCGACTATAATCCGTTCTATGCGGGGTTTGGCAATAGAGACACGGATGAACTCAGTTACAGGAAGATAGGAATCCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA