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...tcaacttttaggggctaagttttattaaattggtcaaatataatttgaaatggccttttcttagaggactgaatttgtgcaactgctgtttgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGAGAAACAACATTACCTATAT
species | Glycine max |
transcript | GLYMA19G35370.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|22928249|gb|BU545388.1|BU545388
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: GACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGNNNGCGCCATGGTEST: gi|21889859|gb|BQ743072.1|BQ743072
genomic: GACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|15001188|gb|BI322002.1|BI322002
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|27446387|gb|CA953510.1|CA953510
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|193686900|gb|FK632523.1|FK632523
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|26047106|gb|CA783997.1|CA783997
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: GCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTTCAG T-CTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGEST: gi|15203207|gb|BI425975.1|BI425975
genomic: GCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATT-CAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGG
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|12690329|gb|BG156665.1|BG156665
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|21676372|gb|BQ628723.1|BQ628723
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: ATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|16348103|gb|BI973698.1|BI973698
genomic: ATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
EST: GCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
genomic: GCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
tgaaatggccttttcttagaggactgaatttgtgcaactgctgtttgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGAGAAACAACATTACCTATAT
gtttgat putative branch site (score: 5)
ttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaacttttaggggctaagttttattaaattggtcaaatataatttgaaatggccttttcttagaggactgaatttgtgcaactgctgtttgatatgcagTTCTCACCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGAGAAACAACATTACCTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - -aaatataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactgc