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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattgctagttataatcaccctcatgctcattgaaaaatctattacatgctttgatggattttttctcctcttttctttggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTCGGTCTTGAACCATTTGGCA

Basic information

species Glycine max
transcript GLYMA19G28580.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28580.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 13
gtatgcattgctagttataatcaccctcatgctcattgaaaaatctattacatgctttgatg-gattt---tttctcctcttttctttggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTCGGTCTTGAACCATTTGGCA
    | ||  |    |||  | |      || | |||| ||| | |  || |  | || ||  | | |   | | |  | ||    ||  || | |||| ||| ||  |  | || ||||| || |||||||||||||||||||| ||||| ||||||||||| || |||||  |  | ||||||||  | |||||||
----gtatgacag--tatcttgatttatgtggt-attgcaaagttttctatagccatttatacggtataaatatatgtttttcctgtttcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGGCTGGGTCTTGATACTTTTGGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929218|gb|BU546357.1|BU546357
EST:     TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCT                         AAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT
genomic: TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCTgtatgcattg ... ggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT
EST: gi|27426935|gb|CA938455.1|CA938455
EST:     TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCT                         AAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT
genomic: TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCTgtatgcattg ... ggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT
EST: gi|308098428|gb|HO760169.1|HO760169
EST:     TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCT                         AAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGT
genomic: TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCTgtatgcattg ... ggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGT
EST: gi|11687486|gb|BF595162.1|BF595162
EST:     TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCT                         AAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT
genomic: TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCTgtatgcattg ... ggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT
EST: gi|7232311|gb|AW567668.1|AW567668
EST:     TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCT                         AAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT
genomic: TCAAAATTCCACTACCCAAAGACTCAGAACGACCCAGGACTTATACTCCTgtatgcattg ... ggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatctattacatgctttgatggattttttctcctcttttctttggttatgcagAAGCATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTCGGTCTTGAACCATTTGGCA
               ctttgat  putative branch site (score: 5)
                         ttttttctcctctttt  putative PPT
                        attttttct  TA-rich tract