1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacacactgacggtgtttgtttgttcagtgtatcctttttgcctcttaatttacttgactattttacatgctaatattgtacctttaaaattgtgtgcagTGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGCAGGTGATGCCGATGGCCACCCGTACGTTTCTTTCACTATCAATCTTGCT
species | Glycine max |
transcript | GLYMA19G27360.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCACAAACAG TGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGCEST: gi|13787391|gb|BG649983.1|BG649983
genomic: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCACAAACAGgcaagtctat ... ttgtgtgcagTGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGC
EST: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCACAAACAG TGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGCEST: gi|6846822|gb|AW349112.1|AW349112
genomic: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCACAAACAGgcaagtctat ... ttgtgtgcagTGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGC
EST: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCACAAACAG TGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGC
genomic: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCACAAACAGgcaagtctat ... ttgtgtgcagTGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGC
ttaatttacttgactattttacatgctaatattgtacctttaaaattgtgtgcagTGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGCAGGTGATGCCGATGGCCACCCGTACGTTTCTTTCACTATCAATCTTGCT
tgctaat putative branch site (score: 2)
taatattgtaccttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacacactgacggtgtttgtttgttcagtgtatcctttttgcctcttaatttacttgactattttacatgctaatattgtacctttaaaattgtgtgcagTGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGCAGGTGATGCCGATGGCCACCCGTACGTTTCTTTCACTATCAATCTTGCT
tacacac
- - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacctt