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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaattgtgctgacagatttatcatcatgtgctccattttttgtaatttggtataccttttgtatcttatgatgtgatcttatctctggcagGTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG

Basic information

species Glycine max
transcript GLYMA18G43020.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43020.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaataaaattgtgctgacagattt-atcatcatgtgctccattttttgtaatttggtat-accttttgtatcttatgatgtgatcttatc----tctggcagGTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
       |||    || || | ||| | ||| || ||  | |||||      |     || ||||| | |   ||      ||  | ||||    | |  ||| |||||||| ||||| ||||||||||| || || ||||| ||||| |||||||||||||| || ||
-----gtaatccatctaaccggtttcaacattatttgg-ctattttccaaggtcattcattaccttctcttgattgctgattggccatatcaacttatttcagATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAG

upper sequence: GLYMA18G43020.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaataaaattgtgctgacagatttatcatcatgtgctccattttttgtaatttg--gtataccttttgtatcttatgatgtgatcttatctctggcagGTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
       ||||   ||   || |||   ||  | |   | ||||     |  ||   || | | | | || ||| || |    |  | |  | |  ||| |||||||| ||||| |||||||||||||| |||||||| || || ||||| || ||||| || ||
-----gtaattcatcttgtagttttgaaatgttttttgctatttcagagatctttctgttttcttctggtttctcataagcctaattaacttgtttcagATGGGGAGCCACTCTTATGAACTCTTTTCTCTTTAATGTCGGTCTCATTCTCCTCTGTTCTATCAG

upper sequence: GLYMA18G43020.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 10
gtaat-aaaattgtgctgacagatttatcatcatgtgctccattttttgtaatt-tggtataccttttgtatcttatgatgtgatcttatctctggcagGTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
||||| |||||| || ||      ||  |||  |||  |   |  || || ||| |  | |     |  |  ||||       | ||| ||| |||||||||||| || ||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||
gtaatgaaaattatggtg------ttgccattttgttatgtttggttggtcattgtcatcttttggtgattgcttactgaaccaactt-tctttggcagGTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCTCCTGTGTTCCATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522977|gb|BU081788.1|BU081788
EST:     GCCATGATGCTTGGACTGAGACTAGTATTCATTACTATACATCCCATGAA                         GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
genomic: GCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaataaaat ... tctctggcagGTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgtaatttggtataccttttgtatcttatgatgtgatcttatctctggcagGTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
                                        tcttatctct  CT-rich tract
                    ttttgtat  TA-rich tract