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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatatttctagttcatgttttcttgttggaatttagttttatgtttttttcaacaacataagtttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATTGGCTTTTCTTGCGTTGCAAGGCTGTG

Basic information

species Glycine max
transcript GLYMA18G28130.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15288220|gb|BI472111.1|BI472111
EST:     CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATT                         TGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGCCCTCATGATT
genomic: CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATTgtaaggatat ... ttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT
EST: gi|22525980|gb|BU084791.1|BU084791
EST:     GGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATT                         TGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGCCCTCATGATT
genomic: GGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATTgtaaggatat ... ttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT
EST: gi|9204101|gb|BE330325.1|BE330325
EST:     CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATN                         TGGCAGAACCAAAGGACTCTATATACTTATTGGATAATNGTNCTCATGATT
genomic: CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATTgtaaggatat ... ttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT
EST: gi|6566103|gb|AW233863.1|AW233863
EST:     CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATT                         TGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT
genomic: CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATTgtaaggatat ... ttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT
EST: gi|51338437|gb|CO982303.1|CO982303
EST:     CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATT                         TGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGCCCTCATGATT
genomic: CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATTgtaaggatat ... ttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT
EST: gi|58017155|gb|CX703897.1|CX703897
EST:     CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATT                         TGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT
genomic: CACTGGACAGAGGGGCATCATCAATAAAGGATGGGGAGGTCTTGGGAATTgtaaggatat ... ttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttgttggaatttagttttatgtttttttcaacaacataagtttcttcccagTGGCAGAACCAAAGGACTCTATATACTTATTGGATAATTGTCCTCATGATTGGCTTTTCTTGCGTTGCAAGGCTGTG
                                            tttcttccc  CT-rich tract
           aatttagttttatgtt  TA-rich tract