1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...acaaagccaagtgaaagtattctggctttggttgatatgtcaaaaatgtgttggacctaaaatgatctgttccgatggtggttcctgctacccgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCA
species | Glycine max |
transcript | GLYMA17G36540.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGGTCTTGAAATGCCTAATCTAGACCCTAGTTATGCAAACATGAGAGCT GTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGEST: gi|193721510|gb|FK658666.1|FK658666
genomic: GTGGTCTTGAAATGCCTAATCTAGACCCTAGTTATGCAAACATGAGAGCTgtatgcttcc ... cccgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGG
EST: GTGGTCTTGAAATGCCTAATCTAGACCCTAGTTATGCAAACATGAGAGCT GTTAAAGAGAAGCGTGCAGAACTTGAAAAAATTAAAATCTACTTTTGTCAGEST: gi|193723566|gb|FK660522.1|FK660522
genomic: GTGGTCTTGAAATGCCTAATCTAGACCCTAGTTATGCAAACATGAGAGCTgtatgcttcc ... cccgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAA-TTAAAATCTACTTTTGTCAG
EST: GTGGTCTTGAAATGCCTAATCTAGACCCTAGTTATGCAAACATGAGAGCT GTTAAAGAGAAGCGTGCAGAACTTAGAAAAAATTAAAATCTACTTTTGTCA
genomic: GTGGTCTTGAAATGCCTAATCTAGACCCTAGTTATGCAAACATGAGAGCTgtatgcttcc ... cccgttacagGTTAAAGAGAAGCGTGCAGAACTT-GAAAAA-TTAAAATCTACTTTTGTCA
atgtgttggacctaaaatgatctgttccgatggtggttcctgctacccgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCA
acctaaa putative branch site (score: 3)
taaaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaagccaagtgaaagtattctggctttggttgatatgtcaaaaatgtgttggacctaaaatgatctgttccgatggtggttcctgctacccgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-caaagcc
- - - - - - - - - - - - gctttgg
- - - - - - - - - - - - - - - - tgatatg
- - - - - - - - - - - - - - - - - - - - - - - -gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgct