1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttgacatttttgcacccccatttgcatgaagactgtccatttgatggtgatttctatgcagAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTGGAAATTATAAGTTGATTGATTGGAGTGTCGAGCCTCCATCAAA
species | Glycine max |
transcript | GLYMA17G17990.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATG AATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTEST: gi|10233864|gb|BE802752.1|BE802752
genomic: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATGgtaagttgac ... ttctatgcagAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTT
EST: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATG AATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTEST: gi|192313935|gb|FK010327.1|FK010327
genomic: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATGgtaagttgac ... ttctatgcagAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTT
EST: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATG AATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTEST: gi|192320132|gb|FK014188.1|FK014188
genomic: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATGgtaagttgac ... ttctatgcagAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTT
EST: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATG AATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTT
genomic: CCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATGgtaagttgac ... ttctatgcagAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTT
tttttgcacccccatttgcatgaagactgtccatttgatggtgatttctatgcagAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTGGAAATTATAAGTTGATTGATTGGAGTGTCGAGCCTCCATCAAA
atttgat putative branch site (score: 5)
tttctat putative PPT
atttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgacatttttgcacccccatttgcatgaagactgtccatttgatggtgatttctatgcagAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTGGAAATTATAAGTTGATTGATTGGAGTGTCGAGCCTCCATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG