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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttacaattttttgtggataccataaaggcactagttcaattttcagttctacaatagtttctctatggtttcttggtttcagGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG

Basic information

species Glycine max
transcript GLYMA17G10610.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G10610.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 3'ss of exon 10
--------------------------gtttcttacaattttttgtggataccataa-aggcactagttcaattttcagttctacaatagtttctctatggtttcttggtttcagGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG
                            ||| | || |||    |  |||   |   |    |||  |  |  | |  || |  | |  |  |  | | |||  |   |  ||||  || || || ||||||||||||||||| |||||||| ||||||||||| || || ||||| || || ||| |  |||| |||||||||
gtttcttaaatacaatttatgactctagttcatgcagtttcccatccatatattctcacattctaactgtaaatccc-ttgttgagtcatacccattttgttcttgaatgacagGTGGACTATGTTGCATGGGTCTGTGATCAAGATGCATATGCATGCAGTGGACAAAAGTGCTCTGCGCAGTCAATAGTATTCATGCATGAG

upper sequence: GLYMA17G10610.1 (Glycine max), 3'ss of exon 10
lower sequence: PP1S41_177V6.1 (Physcomitrella patens), 3'ss of exon 11
-------gtttcttacaattttttgtggataccataaaggc-actagttcaattttca-----gttctacaatagtttctctatggtttcttggtttcagGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG
        |||   |||||  |||||| ||        ||    |||   |   |  |     ||| |      |    | |  | ||         ||||| || || || || ||||| ||||| ||||| || ||||| |||||||| || |||||||||||||||||| |  ||||||||||||||
ttaagagatttgacacaatcatttgtgaattgagggtgggttgatagccaagagtgtactgatgttttgatgaggaaaatgtgggcttctgcaaacacagGAGGACTATGTTGCGTGGGTGTGTGACCAGGACGCTTACGCTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAG

upper sequence: GLYMA17G10610.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ08918 (Selaginella moellendorffii), 3'ss of exon 9
gtttcttacaattttttgtggataccataaaggcactagttcaattttcagttctacaatagtttctctatggtttcttggtttcagGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG
                           | |  |   |     |  ||| ||  || |  | |||      | |  | |||    |||   || ||||| |||||||| || || ||||||||||| || |||||||||||||| || || ||||| ||  |  | || ||||| |||
--------------------------gtgactggtttctaagatcttttag--ctgctttggttgacgagtagacttttg----cagATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAG

upper sequence: GLYMA17G10610.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ29772 (Selaginella moellendorffii), 3'ss of exon 9
gtttcttacaattttttgtggataccataaaggcactagttcaattttcagttctacaatagtttc--tctatggtttcttggtttcagGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG
                               |  ||| |||   | |    |  |  |   | |    |  | |  | |    || |||   || ||||| |||||||| || || ||||||||||| || |||||||||||||| || || ||||| ||  |  | || ||||| |||
-------------------------------gtgactggtt---tctaagatcttttagctgctgtggttgacgagtacacttttgcagATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207832574|gb|GD802690.1|GD802690
EST:     TGGAAGATGCTGGATTTGACTGGAAAATACTGGGCCCTGATGTGCATCAG                         GAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGT
genomic: TGGAAGATGCTGGATTTGACTGGAAAATACTGGGCCCTGATGTGCATCAGgtttcttaca ... ttggtttcagGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcactagttcaattttcagttctacaatagtttctctatggtttcttggtttcagGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG
                                         tttctt  CT-rich tract
       ttcaatttt  TA-rich tract