1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactatattctttccctgcagcttactaatttcaactctatcaaattctatcttcagtccataccaaagaaaatagacagatccagttgatatagagttttcaaattttgaagcctttatgttgaatgaaaattttatctagtccaatttgaattatcgatggttcttatttgaggtgtgattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTT
species | Glycine max |
transcript | GLYMA17G09740.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGCCCTGCCTTGATTCTTTGCAA GATTGGTTCACTTACAATTTAAAACTCCAGATAATGTAAAGTATCCATCCEST: gi|16279091|gb|BI943253.1|BI943253
genomic: GGCCCTGCCTTGA-TCTTTGCAAgtactatatt ... gattatccagGATTGGTTCACTTAC-ATTTAAAACTCCAGATAATGTAAAGTATCCATCC
EST: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAA GATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATEST: gi|16279496|gb|BI943466.1|BI943466
genomic: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAAgtactatatt ... gattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCAT
EST: GACAGGATCTATTGTTCTGAAGACACTTTGCCCTGCCTTGATCTTTGCAA GATTGGTTCACTTACATTTAAAACTTCAGATGATGTAAAGTATCCATTCC-EST: gi|14990207|gb|BI315880.1|BI315880
genomic: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAAgtactatatt ... gattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCAT-CCA
EST: CTTGATCTTTGCAA GATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATEST: gi|254319063|gb|GR828791.1|GR828791
genomic: CTTGATCTTTGCAAgtactatatt ... gattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCAT
EST: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAA GATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATEST: gi|16281789|gb|BI944670.1|BI944670
genomic: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAAgtactatatt ... gattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCAT
EST: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAA GATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATEST: gi|16278414|gb|BI942892.1|BI942892
genomic: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAAgtactatatt ... gattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCAT
EST: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAA GATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCAT
genomic: GACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAAgtactatatt ... gattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCAT
ttatctagtccaatttgaattatcgatggttcttatttgaggtgtgattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTT
aatttgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatattctttccctgcagcttactaatttcaactctatcaaattctatcttcagtccataccaaagaaaatagacagatccagttgatatagagttttcaaattttgaagcctttatgttgaatgaaaattttatctagtccaatttgaattatcgatggttcttatttgaggtgtgattatccagGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG