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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttatttgatgtttgataataaaccatgctgtgtaatatttctatttacatacaataagttttaagtataaagcaaatacagaatgtttcttaaatattctttcacatggaacctctagaatgctaaaattcacatttttcattagGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGGCAC

Basic information

species Glycine max
transcript GLYMA17G07760.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07760.2 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G040945_T01 (Zea mays), 3'ss of exon 9
gtatgctttatttgatgtttgataataaaccatg-ctgtgt----aatatttctatttacatacaata-agttttaagtataaagc--------aaatacagaatgtttcttaaatattctttcacatggaacctctagaatgctaaaattcacatttttcattagGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGGCAC
|| || ||  |||||  ||  | || || |  |  |||| |    |||  |  | | | |      || || ||| | | |              ||| | | |   || |  || |||  | ||  || ||  |||   ||   |   ||     | |  ||||||||||||||||||| || || || || |||||||| ||||| || ||||| || || ||||| ||||| ||  | || |  ||||| |||    
gt-tggttattttgaacttaaacaagaatcagtttctgtattctcaattgtcttttctccgagtggtacagctttcactcttttttctctcccttaattccgtaccattttagaaaatt--tccatttg-aatttctc--atctcattttttgtgctatatattagGTGATATATTTTGGTGACCATCTTTTGAGTGACTTGAGAGGACCTTCAAAAGCTGGTTGGCGAACAGCTGCTGTAATTCGAGAACTTGAG----

upper sequence: GLYMA17G07760.2 (Glycine max), 3'ss of exon 10
lower sequence: EFJ33659 (Selaginella moellendorffii), 3'ss of exon 8
gtatgctttatttgatgtttgataataaaccatgctgtgtaatatttctatttacatacaataagttttaagtataaagcaaatacagaatgtttcttaaatattctttcacatggaacctctagaatgctaaaattcacatttttcattagGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGGCAC
                                                                                                 | ||  || || |||  |  | || || |||||| |     ||||||      ||||  | ||||||||||||||| |||||||||| ||| ||||||| |||||||| || ||||| || || || || || |  || || |||    
----------------------------------------------------------------------------------------------gtgtgaaggtt-ttgcactggacagctttaaaatgctta-----acatttg----cagGTCCTGTATTTTGGAGATCACTTATTTAGTGATTTACGAGGCCCTTCAAAGGCTGGATGGCGCACGGCTGCTATAATTCGGGAGCTTGAG----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatattctttcacatggaacctctagaatgctaaaattcacatttttcattagGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGGCAC
                              tgctaaa  putative branch site (score: 2)
                                            tttttcatt  putative PPT
                                 taaaattcacattttt  TA-rich tract