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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctctctccctctctcctttacctggactggccttgctattatacacgcaatttaggatatagagattattaatttttcttgtcactgtttgttctttcaatttgatgtttatatatcaaaatcttctgtaaaaatctagaaataaatatttaatatattctttattttctaatagAGAGGACCCGAGGATGTCATGAACCACCTTGCTAGAGAAGCTCTTCATGGGAAAGTGAAAAGCATCCTATTCCTAATGCCTTGCCATGCCACTCCCTACT

Basic information

species Glycine max
transcript GLYMA17G07620.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07620.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0037g01100.t01 (Vitis vinifera), 3'ss of exon 8
gtctctctctccctctctcctttacctggactggccttgctattatacacgcaatttaggatatagagattattaatttttcttgtcactgtttgttctttcaatttgatgtttatatatcaaaatcttctgtaaaaatctagaaataaatatttaatatattctttattttctaatagAGAGGACCCGAGGATGTCATGAACCACCTTGCTAGAGAAGCTCTTCATGGGAAAGTGAAAAGCATCCTATTCCTAATGCCTTGCCATGCCACTCCCTACT
                                            | | ||  |  ||  |    |||  | ||  | |||| | ||   ||||||   |||| || |  ||||| |   | |   |   ||| |||  |   |                                  |||||||| | |||||||| |||||  | ||  | | ||| |||    |    ||||||||||| ||||| || |||||||| ||||||||||| || ||||
------------------------------------------agaaagacctagcttcag---cagaagtcatggaatttt-tagt--ttgtttgcgttttccatcttgtgtttttggttgattcttacctgcaaaggtgctg-------------------------------ggcagAGAGGAACTGAGGATGTAATGAATTATCTATCCAAAGAGGCTTCCAACAATAAAGTGAAAAGTATCCTTTTTCTAATGCCCTGCCATGCCACACCTTACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttctgtaaaaatctagaaataaatatttaatatattctttattttctaatagAGAGGACCCGAGGATGTCATGAACCACCTTGCTAGAGAAGCTCTTCATGGGAAAGTGAAAAGCATCCTATTCCTAATGCCTTGCCATGCCACTCCCTACT
                           atttaat  putative branch site (score: 4)
                                   tattctttattttct  CT-rich tract
        taaaaatctagaaata  TA-rich tract