1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgcttgttttgagcttgatgctcccttaatttaaaccttatccctttatctttctaagagattcactctgccacaattaataatacttttaacatattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAG
species | Glycine max |
transcript | GLYMA17G07050.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAG TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATEST: gi|105633831|gb|DW247194.1|DW247194
genomic: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAGgtgcttgttt ... tattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGAT
EST: TAAGAACAGCACTTACACGATATGCAGATGTCTTGAGTTCACCCAAAAAG TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATEST: gi|254332042|gb|GR846245.1|GR846245
genomic: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAGgtgcttgttt ... tattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGAT
EST: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAG TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATEST: gi|254341892|gb|GR853029.1|GR853029
genomic: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAGgtgcttgttt ... tattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGAT
EST: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAG TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATEST: gi|21887259|gb|BQ740472.1|BQ740472
genomic: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAGgtgcttgttt ... tattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGAT
EST: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAG TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATEST: gi|105633448|gb|DW246811.1|DW246811
genomic: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAGgtgcttgttt ... tattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGAT
EST: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAG TCTGCCTTGCTTGCCTTAGCTGCTCATGCATCCGATCCATCTGAAGCTGAT
genomic: TAAGAACAGCACTTACACGATATGCAGATGTTTTGAGTTCACCCAAAAAGgtgcttgttt ... tattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGAT
ctttctaagagattcactctgccacaattaataatacttttaacatattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAG
ttttaac putative branch site (score: 2)
tattttcc CT-rich tract
acaattaataatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttgttttgagcttgatgctcccttaatttaaaccttatccctttatctttctaagagattcactctgccacaattaataatacttttaacatattttccagTCTGCCTTGCTTGCCTTAGCTGCTCATGCATCTGATCCATCTGAAGCTGATCGACTAAGACATCTTGCCTCACCTGCTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA