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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtacttccctctatatgaagacctttattctgcgatgcccctcccgctaaagcaggttccttgacctagattatgagattcgcgagtgtactgattacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTTTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGG

Basic information

species Glycine max
transcript GLYMA17G07040.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07040.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G57410.3 (Arabidopsis thaliana), 3'ss of exon 10
gtacttccctctatatgaagacctttattctgcgatgcccctcccgctaaagcaggttccttgacctagattatgagattcgcgagtgtactgattacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTTTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGG------
    | | |||||| |      |  || |  ||    |     |  || ||   ||||  || |     |   |    ||      ||   |  || |||   |||||||||||||||||||||||||| |||||   | | |      | ||  |||| | ||| | |  |||   ||||||||||||||||||| |||      
---gtacgctctattt------ccatactaagcttaacgtaagcaacttaacatggtttattcataagaaaagtt---tttatctttggttttgttgcagACAGATATGCGTGATTTCTTAAATGCTCCAAATGGGTCAGCTA------CATTGGCTGGAAGTGAGAAACGTGAGGCTGATCCTTCACAATCTCCACTGGGTGGGA

upper sequence: GLYMA17G07040.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 10
gtacttccctctatatgaa-gacctttattctgcgatgcccctcccgctaaagcaggttccttgacctagattatgagattcgcgagtgt-actga-ttacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTTTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGG
 || ||  ||    || |   |     ||| | | | |   ||  |      |    |    | ||  || || | |  |   |  || | | ||| || ||||| ||||||||||||||||| |||||||| |||||  |  | |||||||||||   || |||||||||| |||| |  ||| | ||||| || |||||||
-tatttttcttatcattagtaatggaaattgttctaaggagctgtcatctttgtttatgtggtaac--aggttctaacttctacaggtatgattgacttgcagGTAGATATGCGTGATTTCTTGAATGCTCCAAATGGGTTGTCCAAGCAATCTTTGGTTGTCAATGAAAGATTTGATACAGATGCCTCACAGTCCCCATTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208187413|gb|GD982223.1|GD982223
EST:     AACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAG                         GTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCT
genomic: AACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAGgtaggttcct ... ctgattacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCT
EST: gi|208120354|gb|GD918819.1|GD918819
EST:     AACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAG                         GTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCT
genomic: AACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAGgtaggttcct ... ctgattacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaaagcaggttccttgacctagattatgagattcgcgagtgtactgattacagGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTTTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGG
                                           tactgat  putative branch site (score: 2)
                     tagattat  TA-rich tract