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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatattgatatttttccatcaattgatcattatggcatgattgtagattttgattggtgaatgatctttgcttatggttggctttttttttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG

Basic information

species Glycine max
transcript GLYMA17G05530.4
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05530.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 9
ttatattgatatttttccatcaattgatcattatggcatgattgtagattttgattggtga----atgatctttg--cttatggttg-gctttttttttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG
     ||| |  || | |||   |||||    ||| |    ||      |||  ||    |     | ||| | |  ||||   |     |  | ||| || || |||||||||  |||| |   | ||||||||  |||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||
----cttgctggttctgcat---ttgatatggatgtccgagtttggagctttactttacaacattgttatcatagaccttacaatcatagtactctttcttgtgcagAAGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208267978|gb|GE072949.1|GE072949
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|208039111|gb|GD835865.1|GD835865
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|10709423|gb|BF009147.1|BF009147
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|207750871|gb|GD726126.1|GD726126
EST:     GCAGACTTCAGATTCGAGAAGTGTCATGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGA
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGA
EST: gi|15285660|gb|BI469551.1|BI469551
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|11687387|gb|BF595063.1|BF595063
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         A---TGGCCGAGAAACAACCAATGATGACACTCCTGAGACGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|193490170|gb|FK455505.1|FK455505
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|207711809|gb|GD693189.1|GD693189
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACT
EST: gi|13312169|gb|BG405829.1|BG405829
EST:     TTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAA-AAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: TTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|7925242|gb|AW831268.1|AW831268
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|26058248|gb|CA801162.1|CA801162
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|208150143|gb|GD950790.1|GD950790
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGACCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|207805431|gb|GD776877.1|GD776877
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAA-CA-CCAATGA
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGA
EST: gi|208052705|gb|GD850028.1|GD850028
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|208146424|gb|GD946261.1|GD946261
EST:     TTGACCAATGGATCATCT-                         --GATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: TTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|193616957|gb|FK571627.1|FK571627
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTACAA
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCT-CAA
EST: gi|208265654|gb|GE063182.1|GE063182
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGA
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGA
EST: gi|208049063|gb|GD846664.1|GD846664
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAAC
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAAC
EST: gi|6072359|gb|AW101746.1|AW101746
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|193680125|gb|FK620755.1|FK620755
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATTATCTG                         AAGATGGCCAAGAAAC
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAAC
EST: gi|193430767|gb|FK394203.1|FK394203
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAA
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAA
EST: gi|207708411|gb|GD691409.1|GD691409
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|24136117|gb|BU926627.1|BU926627
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|5175311|gb|AI759644.1|AI759644
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|193500769|gb|FK464566.1|FK464566
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|6454619|gb|AW185302.1|AW185302
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|207745466|gb|GD714028.1|GD714028
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|208325993|gb|GE119703.1|GE119703
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAGGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|21637806|gb|BM107961.1|BM107961
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|193624299|gb|FK573395.1|FK573395
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|19053974|gb|BM732641.1|BM732641
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: gi|208067943|gb|GD861453.1|GD861453
EST:     GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG                         AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttgattggtgaatgatctttgcttatggttggctttttttttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG
   ttttgat  putative branch site (score: 4)
                                 ttggcttttttttttt  putative PPT
                                      tttttttttttttgta  TA-rich tract