1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcaacttgtgagcagcattaaatatgtatagccaagttgtgtaaattctgtttgttgtaaaattgctttgtggcagttttcataggctgtgaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGAT
species | Glycine max |
transcript | GLYMA17G05530.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|208267978|gb|GE072949.1|GE072949
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCEST: gi|10709102|gb|BF008826.1|BF008826
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCC
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|163922870|gb|EH038800.1|EH038800
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: TCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|163921601|gb|EH038699.1|EH038699
genomic: TCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: TCCTC-ATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|6454389|gb|AW185072.1|AW185072
genomic: TCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: TCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|13312169|gb|BG405829.1|BG405829
genomic: TCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|193493686|gb|FK458868.1|FK458868
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: ATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|26058248|gb|CA801162.1|CA801162
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|9563980|gb|BE473489.1|BE473489
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: CTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|208146424|gb|GD946261.1|GD946261
genomic: CTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|6072359|gb|AW101746.1|AW101746
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|24136117|gb|BU926627.1|BU926627
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|193488603|gb|FK453584.1|FK453584
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: ATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|193687566|gb|FK629225.1|FK629225
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: ATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|207745466|gb|GD714028.1|GD714028
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|208082894|gb|GD882160.1|GD882160
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|208309506|gb|GE103368.1|GE103368
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: ATACCACTGCTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|208189187|gb|GD984403.1|GD984403
genomic: ATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|208325993|gb|GE119703.1|GE119703
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAGGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACAATTTTAACATTCTCTTAATEST: gi|193653976|gb|FK596964.1|FK596964
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACA-TTTT--CATTCTCTTAAT
EST: ATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|21637806|gb|BM107961.1|BM107961
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTEST: gi|193716792|gb|FK650752.1|FK650752
genomic: AGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACT
EST: ATGTTGGCAATCTTGCTCCAGAG GTTACTTCTAGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAAC
genomic: ATGTTGGCAATCTTGCTCCAGAGgcaaggataa ... gaaattgcagGTTACTTCT-GTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAAC
ttctgtttgttgtaaaattgctttgtggcagttttcataggctgtgaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGAT
tttgttgtaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaacttgtgagcagcattaaatatgtatagccaagttgtgtaaattctgtttgttgtaaaattgctttgtggcagttttcataggctgtgaaattgcagGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -acttgtg
- - - - - agcagca
- - - - - - - - - - - - - - - - - agttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggctgt