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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaattaatcattctgatggctaataatcctacatcacacgtttgtgaccttgattttccaagttgcatctatgctagtactacgttcatattaccaaacttataaacaacctaaaccttcatcacacgtttcctcgctcattgaattggtatgctgctttttgtaaaattgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACTTAAAAGCTTACCTTCAGAATGCTTATGTTCATCCAGTTTTCAAAGCTA

Basic information

species Glycine max
transcript GLYMA17G01400.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01400.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatgtcaattaatcattctgatggctaataatcctacatcacacgtttgtgaccttgattttccaagttgcatctatgctagtactacgttcatat-taccaaacttataaacaacctaaaccttcatcacacgtttcctcgctcattgaattggtatgctgctttttgtaaaattgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACTTAAAAGCTTACCTTCAGAATGCTTATGTTCATCCAGTTTTCAAAGCTA
                                                                           |  |||   || | | ||     |       | ||  |       |   ||    |||  | |  | | ||| |   | | |||      || ||   |   ||  ||||||||| ||||| || || |||||||||||||| | ||| || ||||| ||  | ||||  |  ||||||||||| ||||||||||| ||||| ||||   
--------------------------------------------------------------------------gttagctcaaaccaagatcgagcattttcggttaatggatggt---agttttagctacatttgttttggttcagtttgt-gttatttaatcttgtgagtaccggtttacagGAAGCTATGATTAAGGATACATTGGAACGAGCAAGAGAACCAAACTTGAATCTTAAAGGGTTTCTTCAGAATGCATATGTTCATCCTGTTTTTAAAGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282656|gb|BE020217.1|BE020217
EST:     TATACTGCAGAGGACGTTTCGAACCTGCGTGTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: gi|31473253|gb|CD415641.1|CD415641
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: gi|58021916|gb|CX708657.1|CX708657
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: gi|51338481|gb|CO982347.1|CO982347
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: gi|10710003|gb|BF009727.1|BF009727
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: gi|193673695|gb|FK616380.1|FK616380
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACAT
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACAT
EST: gi|9565742|gb|BE475251.1|BE475251
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: gi|10846371|gb|BF069280.1|BF069280
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: gi|193451337|gb|FK420557.1|FK420557
EST:     TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAG                         GAAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAA
genomic: TATACTGCAAAGGACGTTTCGAACCTGCGTTTGTTAGATATCCCTTACAGgtatgtcaat ... ttgtaaacagG-AAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacgtttcctcgctcattgaattggtatgctgctttttgtaaaattgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACTTAAAAGCTTACCTTCAGAATGCTTATGTTCATCCAGTTTTCAAAGCTA
                                  tttttgtaaaattgta  TA-rich tract