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...tctcaatttggtgctgtataattttattctaatgaattccagaatgcaaatgtatgtttcaacttgattaaaaattccaattctgcattttctaatgcagGTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGCGTCTGGATTGCAGGAAAGGAATATACCCTTGCTCGGGTGCATTTCTTGT
species | Glycine max |
transcript | GLYMA16G33300.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AACATGTGGAG GTGCTAGAGGAAAACCTGGTACTTGGGTAAGTATGTACAGTGGTCACAAACEST: gi|193544241|gb|FK501166.1|FK501166
genomic: AACATGTGGAGgtattgttca ... tctaatgcagGTGCTAGAGGAAAACCTGG-AC-TGGG-AAG-ATGTACAGTGGTCACAAAC
EST: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAG GTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGCEST: gi|58023638|gb|CX710379.1|CX710379
genomic: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAGgtattgttca ... tctaatgcagGTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGC
EST: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAG GTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGCEST: gi|58020000|gb|CX706742.1|CX706742
genomic: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAGgtattgttca ... tctaatgcagGTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGC
EST: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAG GTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGCEST: gi|207768610|gb|GD739119.1|GD739119
genomic: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAGgtattgttca ... tctaatgcagGTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGC
EST: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAG GTGCTAGAGGAAAAEST: gi|8286545|gb|BE024104.1|BE024104
genomic: AGAAACTGATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAGgtattgttca ... tctaatgcagGTGCTAGAGGAAAA
EST: ATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAG GTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGC
genomic: ATGCGCACGATTGGAATCCCTCTGCCTCTTGAACATGTGGAGgtattgttca ... tctaatgcagGTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGC
gcaaatgtatgtttcaacttgattaaaaattccaattctgcattttctaatgcagGTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGCGTCTGGATTGCAGGAAAGGAATATACCCTTGCTCGGGTGCATTTCTTGT
ttctaat putative branch site (score: 2)
cattttct CT-rich tract
aacttgattaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcaatttggtgctgtataattttattctaatgaattccagaatgcaaatgtatgtttcaacttgattaaaaattccaattctgcattttctaatgcagGTGCTAGAGGAAAACCTGGACTGGGAAGATGTACAGTGGTCACAAACTGGCGTCTGGATTGCAGGAAAGGAATATACCCTTGCTCGGGTGCATTTCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - -tgctgta
- - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt