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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaatgcagtcaacgtgttggatgatatattgatttactatacattcttttatatattgagtgtctgtttccatgacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG

Basic information

species Glycine max
transcript GLYMA16G32820.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 16
gtaagttaatgcagtcaacgtgttggatgatatattgatttact----atacattc----ttttatatattgagtgtctgtttccatgacaac-ttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG
|||||||       | |   | ||       |  ||||||||      ||| ||||    | | || |  |||   | |       ||  ||  |||||||||  | |  ||||||||||| ||||||||||||||||| ||| | || || ||||| |||||| | ||| |||||
gtaagttgtcttcctaagattttttagcataactttgatttatatcagataaattcaacatataatctggtgataattttcccatttggaaatgttagGTTGGAGTATTGCTTGCTCAAATAGGAGAATTTGCTTTTGTTCTCTTAAGCCGGGCTTCGAATCTTAAACTTATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401828|gb|EV271641.1|EV271641
EST:     TAGTTACAAAGGCCTTCGGATATAGCCTTAAGACATCATTTATT                         GTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTTCTCCTGAGT
genomic: TAGTTACAAAGGCCTTCGGATATAGCCTTAAGACATCATTTATTgtaagttaat ... gacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatttactatacattcttttatatattgagtgtctgtttccatgacaacttagGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAG
 tattgat  putative branch site (score: 3)
     ttactatacattcttt  TA-rich tract