1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaggttttccacacttgtattcttcgtttattttccctttgtccatgactgcatctttcatacggagaatggctgattctaaatttctcatcaggattgtctttctatatgcagGTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAATGTTCTCCTTCCAGCTTCAAGAGGGTCAACATCCGTTTAACTTGTCAA
species | Glycine max |
transcript | GLYMA16G32480.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTATGCAGCATTTGCATCTCTTCTTCACAATAAGAACAGTTCGTTG GTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAEST: gi|31311261|gb|CD396464.1|CD396464
genomic: CTCTTTATGCAGCATTTGCATCTCTTCTTCACAATAAGAACAGTTCGTTGgtaaggtttt ... ctatatgcagGTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACA
EST: CTCTTTATGCAGCATTTGCATCTCTTCTTCACAATAAGAACAGTTCGTTG GTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAEST: gi|33389754|gb|CA852961.1|CA852961
genomic: CTCTTTATGCAGCATTTGCATCTCTTCTTCACAATAAGAACAGTTCGTTGgtaaggtttt ... ctatatgcagGTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACA
EST: CTCTTTATGCAGCATTTGCATCTCTTCTTCACAATAAGAACAGTTCGTTG GTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACA
genomic: CTCTTTATGCAGCATTTGCATCTCTTCTTCACAATAAGAACAGTTCGTTGgtaaggtttt ... ctatatgcagGTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACA
atacggagaatggctgattctaaatttctcatcaggattgtctttctatatgcagGTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAATGTTCTCCTTCCAGCTTCAAGAGGGTCAACATCCGTTTAACTTGTCAA
ttctaaa putative branch site (score: 2)
ttgtctttct putative PPT
attctaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttttccacacttgtattcttcgtttattttccctttgtccatgactgcatctttcatacggagaatggctgattctaaatttctcatcaggattgtctttctatatgcagGTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAATGTTCTCCTTCCAGCTTCAAGAGGGTCAACATCCGTTTAACTTGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG