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...ttcattggtgtatttatctcaaaaaatgagaatcactttgcatgtatctgcttgtatgcattgacagatttattatctatctaatttgctggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATACATGGAATTCTGTGATGATTCTGAGGCAACTTTTAGAAGAGCCTTGGAT
species | Glycine max |
transcript | GLYMA16G28980.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGA GAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATAEST: gi|298178500|gb|HO024235.1|HO024235
genomic: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGAgtgagttctt ... ggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATA
EST: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGA GAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATAEST: gi|298165064|gb|HO011113.1|HO011113
genomic: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGAgtgagttctt ... ggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATA
EST: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGA GAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATAEST: gi|57575689|gb|CX548664.1|CX548664
genomic: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGAgtgagttctt ... ggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATA
EST: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGA GAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATA
genomic: CTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGAgtgagttctt ... ggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATA
atctgcttgtatgcattgacagatttattatctatctaatttgctggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATACATGGAATTCTGTGATGATTCTGAGGCAACTTTTAGAAGAGCCTTGGAT
atctaat putative branch site (score: 3)
agatttattatctatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcattggtgtatttatctcaaaaaatgagaatcactttgcatgtatctgcttgtatgcattgacagatttattatctatctaatttgctggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCCATATACATGGAATTCTGTGATGATTCTGAGGCAACTTTTAGAAGAGCCTTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -attggtg
- - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgca