Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgaagattgaatatttaatatttcaaattctttggtttcttggttgatgtttacatagatttgtcttgtttctgaggatttaatgatagaaataagcgaaacacttggaataacttgttcatttcttgaatttaatggtgcattctttttcccttcttttgcaatagATTTTGGTATGACTGGTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGA

Basic information

species Glycine max
transcript GLYMA16G27500.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27500.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G305007_T01 (Zea mays), 3'ss of exon 10
gtaattgaagattgaatatttaatatttcaaattctttggtttcttggttgatgtttacatagatttgtcttgtttctgaggatttaatgatagaaataagcgaaacacttggaataacttgttcatttcttgaatttaatggtgcattctttttcccttcttttgcaatagATTTTGGTATGACTGGTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGA
                                                                         || ||| |  ||||  || | ||| |||  ||||  ||  ||  | |||       ||  ||||  ||  ||  |   | |  |  | |||  ||||||||||||| ||||  || || |||  ||||||| | || || ||||| || ||||||||||| |||||||| ||||||||||||||||| || || || ||
--------------------------------------------------------------------caactttcctgtgtgtttag-gaaaaaaagaagaaaaac-tttacaaccaattgaatgaagctcaaatt--attttgattaaatgtgacactatttgtcaatagATTTTGGGATGATGGGAGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCTTGTCTTCATCTTGTTAACCGTGATTTTGATGCTTTAGCAAAAGA

upper sequence: GLYMA16G27500.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G71810.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaattgaagattgaatatttaatatttcaaattctttggtttcttggttgatgtttacatagatttgtcttgtttctgaggatttaatgatagaaataagcgaaacacttggaataacttgttcatttcttgaatttaatggtgcattctttttcccttcttttgcaatagATTTTGGTATGACTGGTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGA
                                                                      |||| | |||    |  |   || | | |      ||  |   || || |   |  | | |  || ||||| |  | ||   |||   || |  |||   ||||||||||||||  || || || |  | ||||||||| || |||||||| ||||| ||||| ||||||||||| ||||| ||  | ||  |||| || ||
----------------------------------------------------------------------ttgtgtttgatatctacaaactaaagagagattttactgtcccaagaagtatcttttgtttataacttaattgaacttttagttttttttttgctgc--cagATTTTGGTATGATGGGGGACTTTAGGCCAGAATTACGTGATGGATTCATGGAAGCATGTCTTCATCTTGTAAATCGTGACTTCAAAGCGCTGGCTAAAGA

upper sequence: GLYMA16G27500.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g01620.t01 (Vitis vinifera), 3'ss of exon 10
gtaattgaagattgaatatttaatatttcaaattctttggtttcttggttgatgtttacatagatttgtcttgtttctgaggatttaatgatagaaataagcgaaacacttggaataacttgttcatttcttgaatttaatggtgcattctttttcccttcttttgcaatagATTTTGGTATGACTGGTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGA
                                                                    |  |||   |  || || |||  |     |   | |||| ||||        |||   | | |  |   |  |||  |||  |||  |   |||| | ||  ||||||||||||||  ||||| ||  ||| |||| | || || ||||| || ||||| ||||| ||||||||||||||||||| |||||||||||| |||||
-------------------------------------------------------------------ttactgtcattttgggttcaattgtg----ttgaccaaactcttgtgtgtgtgtgtgtgtgtgtgtatcatgttggaccatcttttaacatctcttat-caccagATTTTGGTATGATGGGTGAATTTGAACCAGAACTCCGAGATGGATTTATTGAAGCCTGTCTCCATCTTGTAAACCGTGATTATGATGCATTGGCTAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgttcatttcttgaatttaatggtgcattctttttcccttcttttgcaatagATTTTGGTATGACTGGTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGA
                          tgcattctttttccct  CT-rich tract
        atttcttgaatttaat  TA-rich tract