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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagaattaagtgttggcataaatagtaaatcccattatctcaagtaagattcaggcaatgctataagtcttccttttctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAG

Basic information

species Glycine max
transcript GLYMA16G26300.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26300.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 9
gtttgtagaattaagtgttggcataaatagtaaatcccattatctcaagtaaga-ttcaggcaatgctataagtcttccttttctac---ctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAG
|||||||| |  |          |  ||    |   ||||||    | |||||| ||||  ||  |||  |  | ||   |    |    || ||||| ||  | || ||||| |||||||| || ||||| |||||| | |||||||| ||||| || ||||||||||| | ||| |||||||| |||
gtttgtagcagca-----caattttgattacgagaaccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208245175|gb|GE041583.1|GE041583
EST:     ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG                         GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
EST: gi|208096619|gb|GD893334.1|GD893334
EST:     ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG                         GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
EST: gi|9986794|gb|BE660902.1|BE660902
EST:     ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG                         GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
EST: gi|58021976|gb|CX708717.1|CX708717
EST:     ATCNTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG                         GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattatctcaagtaagattcaggcaatgctataagtcttccttttctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAG
                                   tcttccttttctacct  CT-rich tract
            taagatt  TA-rich tract