1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagatcaaacatccaactttatgctccttgtcgataccctacatcatgtataagaatgaaattgttaatcaatgtttaccatttttgaattcagGTTGCTATTGTGACAGTGGCATTTCCTGCAACCCCACTGCTACTGGCTAGAGCACGTATATGCATATCTGCAGCTCATTCAAGGGAGGACCTTATCAAAG
species | Glycine max |
transcript | GLYMA16G26210.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAAT GTTGCTATTGTGACAGTGGCATTTCCTGCAACCCCACTGCTACTGGCTAGAEST: gi|7796241|gb|AW781638.1|AW781638
genomic: ACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAATgtaagatcaa ... ttgaattcagGTTGCTATTGTGACAGTGGCATTTCCTGCAACCCCACTGCTACTGGCTAGA
EST: ACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAAT GTTGCTATTGTGACAGTGGCATTTCCTGCAACCNCACTGCTACTGGCTAGA
genomic: ACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAATgtaagatcaa ... ttgaattcagGTTGCTATTGTGACAGTGGCATTTCCTGCAACCCCACTGCTACTGGCTAGA
tacatcatgtataagaatgaaattgttaatcaatgtttaccatttttgaattcagGTTGCTATTGTGACAGTGGCATTTCCTGCAACCCCACTGCTACTGGCTAGAGCACGTATATGCATATCTGCAGCTCATTCAAGGGAGGACCTTATCAAAG
tgttaat putative branch site (score: 3)
ccattttt putative PPT
tataagaatgaaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcaaacatccaactttatgctccttgtcgataccctacatcatgtataagaatgaaattgttaatcaatgtttaccatttttgaattcagGTTGCTATTGTGACAGTGGCATTTCCTGCAACCCCACTGCTACTGGCTAGAGCACGTATATGCATATCTGCAGCTCATTCAAGGGAGGACCTTATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA