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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatttctgttaccattctgccttcatcagcattggcctttatttccttttgttgtgagcaatttaaaggttaacatgtctcagctcatgacctcaaattttatcttctgaacatgattcctttaaacagGAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAAACAGCAACACATTTCAGTTCCTCAGTGTAGTGTTTGATGGTAACGGCAA

Basic information

species Glycine max
transcript GLYMA16G25600.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402272|gb|EV272085.1|EV272085
EST:     GACTTTCTGAAGAATGCGAGAAGCTTACATCCGAAAATAATTCTATCAAG                         GAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAA
genomic: GACTTTCTGAAGAATGCGAGAAGCTTACATCCGAAAATAATTCTATCAAGgtagatttct ... ctttaaacagGAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAA
EST: gi|254333244|gb|GR850494.1|GR850494
EST:     GACTTTCTGAAGAATGCGAGAAGCTTACATCCGAAAATAATTCTATCAAG                         GAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAA
genomic: GACTTTCTGAAGAATGCGAGAAGCTTACATCCGAAAATAATTCTATCAAGgtagatttct ... ctttaaacagGAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAA
EST: gi|22523727|gb|BU082538.1|BU082538
EST:     GACTTTCTGAAGAATGCGAGAAGCTTACATCCGAAAATAATTCTATCAAG                         GAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAA
genomic: GACTTTCTGAAGAATGCGAGAAGCTTACATCCGAAAATAATTCTATCAAGgtagatttct ... ctttaaacagGAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtctcagctcatgacctcaaattttatcttctgaacatgattcctttaaacagGAAGAGTTGGAGCGGTTGTGTGGTCCAGAAGCAGTTGCTAACCTGGATTAAACAGCAACACATTTCAGTTCCTCAGTGTAGTGTTTGATGGTAACGGCAA
                                          ttccttt  CT-rich tract
 tcaaattttatctt  TA-rich tract