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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatatgatgctgtataagttctgattttctaaaccctctcttcccaagcatgacttattgtcatttatccaaaaggtcaagcattatttgctaactgagctcctgcagGTTGGTATTGGATTACTTGTTCTTCAGCAATTATCTGGTATCAATGGAATTTTGTTCTATTCAACTACCATCTTTGCAAATGCAG

Basic information

species Glycine max
transcript GLYMA16G25310.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523104|gb|BU081915.1|BU081915
EST:     CAATCCGATTTGCAGATCTCAAGAGGAAAAGATATTGGTTCCCGTTAATG                         GTTGGTATTGGATTACTTGTTCTTCAGCAATTATCTGGTATCAATGGAATT
genomic: CAATCCGATTTGCAGATCTCAAGAGGAAAAGATATTGGTTCCCGTTAATGgtataatatg ... gctcctgcagGTTGGTATTGGATTACTTGTTCTTCAGCAATTATCTGGTATCAATGGAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttattgtcatttatccaaaaggtcaagcattatttgctaactgagctcctgcagGTTGGTATTGGATTACTTGTTCTTCAGCAATTATCTGGTATCAATGGAATTTTGTTCTATTCAACTACCATCTTTGCAAATGCAG
                                   tgctaac  putative branch site (score: 1)
 ctcctgc  putative PPT
 attattt  TA-rich tract