1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tattttgcattctatgtttttactctgaatgtactattatacgaagcgtcttgaatttgacctgatttcatgcatccttttgtgttatgtacatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC
species | Glycine max |
transcript | GLYMA16G24270.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACAAAAATTGCTG GTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTEST: gi|193413238|gb|FK377319.1|FK377319
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACAAAAATTGCTGgtctagaagc ... acatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGT
EST: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACAAAAATTGCTG GTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTEST: gi|192303245|gb|FG995581.1|FG995581
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACAAAAATTGCTGgtctagaagc ... acatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGT
EST: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACAAAAATTGCTG GTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACAAAAATTGCTGgtctagaagc ... acatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGT
gcgtcttgaatttgacctgatttcatgcatccttttgtgttatgtacatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC
acctgat putative branch site (score: 4)
ttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttgcattctatgtttttactctgaatgtactattatacgaagcgtcttgaatttgacctgatttcatgcatccttttgtgttatgtacatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC
- - - gcattct
- - - - - - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttatg