1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttagttaccatatttcttcatcttagtgtaattaaggttattgctacaatacaagttttatgaacatatcaaacatataatgtcaacaattaccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAATTTGATGCTATAGATGTAGACAAAAATGGTTCGATTAGCCTGGAAGAGA
species | Glycine max |
transcript | GLYMA16G23870.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGEST: gi|193364409|gb|FK328914.1|FK328914
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
EST: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAAEST: gi|193432383|gb|FK394769.1|FK394769
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAA
EST: TGAAATATAGTCGATTCAAACAAATTTGCACTGAGG GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAAGATCAEST: gi|207825702|gb|GD797329.1|GD797329
genomic: TGAAATATAGTCGATTCAAAC-AATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATAT-AAAAGATCA
EST: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGEST: gi|208085782|gb|GD880636.1|GD880636
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
EST: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
acaatacaagttttatgaacatatcaaacatataatgtcaacaattaccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAATTTGATGCTATAGATGTAGACAAAAATGGTTCGATTAGCCTGGAAGAGA
ttaccct CT-rich tract
atatcaaacatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagttaccatatttcttcatcttagtgtaattaaggttattgctacaatacaagttttatgaacatatcaaacatataatgtcaacaattaccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAATTTGATGCTATAGATGTAGACAAAAATGGTTCGATTAGCCTGGAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - -cttagtg
- - - - - - - - - - - - - - - - - - - - -tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcaac