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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcacttatttccactcagtctttggtgtgagaaaactttatgtttctcagttatatttaaatctgttcacttttacagGTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATTATACAAG

Basic information

species Glycine max
transcript GLYMA16G23360.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23360.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g03780.t01 (Vitis vinifera), 3'ss of exon 10
gttagcacttatttccactcagt-ctttggtgtgagaaaactttatgtttctcagttatatttaaatctgttcacttttacagGTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATTATACAAG---
||    |  |  ||  | | | | |||| || | | | ||    | ||    |  | ||    || | | ||     || |||||||||||| ||||| || |||||||||||||| |||||| || | ||| || | ||    
gtccttatatgcttgaattaattacttttgtat-aaacaataacaagtagaact-tcatcaccaattttttttgggcttgcagGTGGCATGCTATTCGCCGCCCAAAGCTCTGGCAGGTTGAGCAATCCTCACTACATAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020839|gb|CX707581.1|CX707581
EST:     ATAGCTGTTCGTGGGGTGTTATTTGGAAATTCTCATCCACTATCCTCCAG                         GTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATT
genomic: ATAGCTGTTCGTGGGGTGTTATTTGGAAATTCTCATCCACTATCCTCCAGgttagcactt ... acttttacagGTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATT
EST: gi|254322780|gb|GR839801.1|GR839801
EST:     ATAGCTGTTCGTGGGGTGTTATTTGGAAATTCTCATCCACTATCCTCCAG                         GTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATT
genomic: ATAGCTGTTCGTGGGGTGTTATTTGGAAATTCTCATCCACTATCCTCCAGgttagcactt ... acttttacagGTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtgagaaaactttatgtttctcagttatatttaaatctgttcacttttacagGTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATTATACAAG
                                          ttcactttt  CT-rich tract
                           ttatatttaaatctgt  TA-rich tract