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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaaactatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA

Basic information

species Glycine max
transcript GLYMA16G19560.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os04g23890.4 (Oryza sativa), 3'ss of exon 8
gtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaaactatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA
          ||     |   |      |||||    |   |  ||  |||    | ||   ||  | ||  | ||  |        | || |   |  |  |  |  ||    | ||  |  |||| || |||||||||||||||||||| ||||| ||||||||||||||||| |||||| | |  |||||||| || ||||  ||||||  ||| ||||| |
---------gtatctgaaaaatctgtgccaaatg--ctactcccaagtattttggagcttgcaatttttaactagtagtgggtatgat-tactacatggtagtgattgcacatctgtgagtgcagGGGGAGCTTCAATACTTCATTGGTGTGCAACTTGATGGAAGTGATCATGTTGAACCCCTCAGGAACCGCCTTTCGGAGAATACTGAGATACAGAGTGCCA

upper sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 7
gtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaaactatatattgtcttcccccctttctagtttctaatgttattctcaatgatttg--tatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA
                                      | ||  |     |  || |||  | ||||   |     |||   |   |  ||   |  |   | ||| |  || |||||  ||| ||||| || ||||||||||||||||| |||||| | |||||||| || ||||| |||||| | |  || || || |||||||  ||||| | |||||||||||
--------------------------------------gtactcactggctatatctcttgtcaacttgttgcacacttgttcatgtggtaccgtgcacactcatttt--attatttgggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA

upper sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G58140.2 (Arabidopsis thaliana), 3'ss of exon 9
gtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaaactatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA
                                |  |    | || |   ||  || |  |||    |   |   |    ||   | || | | |  | |  | | | | | | || | |   ||||| || |||||||||||||| ||||| || || |||||||||||||||||||| ||| |  |||| ||  ||||||||| ||| |||   || ||| | |
-------------------------------gtcttcgtgagattattgttatatctggattccgattcttgaagaaaaccgtgcattgttgctgattacatgacttt-attcatctat---tagGGAGAGCTTCAATACTTCATCGGTGTGCAGCTTGATGGAAGTGATCATGTAGAGCCCCTCCAAAATCGTTTGTCTGAGAGAACAGAGATGCAGAGTTCGA

upper sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 8
gtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaa-actatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA
|||    ||| |   |||| ||| | |||   |||||||    |  |     |  || |||| |  ||  |  ||   |     | || | ||| ||   ||||||  ||             ||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||| |   |||||||||||| |||  ||||||||||||||||||||
gtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgcagcttccttcatgactttccaagtctcc--tgttatattcg------------tagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA
                       ttctaat  putative branch site (score: 2)
                                       aatgatttgtattta  TA-rich tract