1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agaaaaaaaaaatgaggggaagggagggagtctggcaagaaaagttgctcgctaataggtgtttgggtaggtattaatgtggcaagatatttttgtttagGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTGGGCC
species | Glycine max |
transcript | GLYMA16G18030.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTCAAGGGGATTTGCATTTGTACACTTTTATTCG GTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAA
genomic: TCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaa ... ttttgtttagGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAA
tgctcgctaataggtgtttgggtaggtattaatgtggcaagatatttttgtttagGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTGGGCC
tattaat putative branch site (score: 2)
tttttgttt putative PPT
aagatatttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaaaaaaaatgaggggaagggagggagtctggcaagaaaagttgctcgctaataggtgtttgggtaggtattaatgtggcaagatatttttgtttagGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- aaaaaaa
- - - - - - tgagggg
- - - - - - - - - - -gggaggg
- - - - - - - - - - - - - - - - - gcaagaa
- - - - - - - - - - - - - - - - - - - - - - -tgctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtggc