1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtagttttactttttttacttaacagtttactcttgttccccttttttcaactaatagaatgttacgtgttcatttttctgtttgaattctttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTCAACATCCTTTCTTTCAG
species | Glycine max |
transcript | GLYMA16G17580.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193688679|gb|FK628748.1|FK628748
genomic: ATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: AAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|207751715|gb|GD723624.1|GD723624
genomic: AAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193406247|gb|FK370586.1|FK370586
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TGATCCCATCCTAGTAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193667314|gb|FK613500.1|FK613500
genomic: TGATCCCATCC-AG-AAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193521415|gb|FK478972.1|FK478972
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: CCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193479622|gb|FK448145.1|FK448145
genomic: CCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: ATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|208062337|gb|GD857685.1|GD857685
genomic: ATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|208091432|gb|GD885893.1|GD885893
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|208141387|gb|GD936135.1|GD936135
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193474066|gb|FK440147.1|FK440147
genomic: TCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: ATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193508916|gb|FK465512.1|FK465512
genomic: ATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|208281582|gb|GE078098.1|GE078098
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193429244|gb|FK394934.1|FK394934
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: CTCTACACTTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCTGCAGAGGCTCTTEST: gi|12690052|gb|BG156388.1|BG156388
genomic: CTCTACAC-TGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: CTCTACACTGAACCCATTCAGAAATGATGATGCCATCAGGCCT-GTGACA TCACCTTGTTCATGGEST: gi|193710657|gb|FK646869.1|FK646869
genomic: CTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAG-CCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGG
EST: CCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTEST: gi|193698058|gb|FK635769.1|FK635769
genomic: CCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
ttcaactaatagaatgttacgtgttcatttttctgtttgaattctttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTCAACATCCTTTCTTTCAG
aactaat putative branch site (score: 2)
ttctttttttgt putative PPT
tttgaattcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagttttactttttttacttaacagtttactcttgttccccttttttcaactaatagaatgttacgtgttcatttttctgtttgaattctttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTTCAACATCCTTTCTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA