Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgggaatttacgtcttctacctttgtggcttctttggtgttactaatacttcttctgaacaatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG

Basic information

species Glycine max
transcript GLYMA16G17190.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346702|gb|BI972297.1|BI972297
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTC
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTC
EST: gi|58019735|gb|CX706477.1|CX706477
EST:     CAGCAAAGAATTTGCNTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|9440072|gb|BE440583.1|BE440583
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|19053982|gb|BM732649.1|BM732649
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|21675217|gb|BQ627568.1|BQ627568
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|22541803|gb|BU091646.1|BU091646
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|15814583|gb|BI786858.1|BI786858
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|151403120|gb|EV272930.1|EV272930
EST:     GCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: GCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|14011349|gb|BG726271.1|BG726271
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAANACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|14011702|gb|BG726624.1|BG726624
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|58014637|gb|CX701379.1|CX701379
EST:     CAGCAAAGAATTTGCCTACATCGTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|14009092|gb|BG725696.1|BG725696
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|19935349|gb|BQ080379.1|BQ080379
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTC
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTC
EST: gi|17519199|gb|BM188241.1|BM188241
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: gi|23729995|gb|BU763106.1|BU763106
EST:     CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG                         TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacctttgtggcttctttggtgttactaatacttcttctgaacaatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG
                         tactaat  putative branch site (score: 1)
                        ttactaata  TA-rich tract