1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aactcatgtcaaagatgttctcatttgatgttttaacctcttaagtggagatatccttctagtcttttactctaatcctcaagatattgctttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATAGCTGCAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAA
species | Glycine max |
transcript | GLYMA16G17150.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATATCAGTACTCCAATCTTCGGTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6455108|gb|AW185791.1|AW185791
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|5753570|gb|AI960857.1|AI960857
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6666292|gb|AW277751.1|AW277751
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6668069|gb|AW279520.1|AW279520
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|7589651|gb|AW705421.1|AW705421
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6667401|gb|AW278852.1|AW278852
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6724652|gb|AW309107.1|AW309107
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6667540|gb|AW278991.1|AW278991
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6455152|gb|AW185835.1|AW185835
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: TATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|151394400|gb|EV264271.1|EV264271
genomic: TATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCCTGATCCCAGTGACAGTTGGCAEST: gi|6455706|gb|AW186389.1|AW186389
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTG-CTGATCCCAGTGACAGTTGGCA
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6455546|gb|AW186229.1|AW186229
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCNTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6455060|gb|AW185743.1|AW185743
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6668142|gb|AW279593.1|AW279593
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: TCAGTACTCCAATCTAT-GATTGTAA-TGCAGCCTATGACTTCATG-CAG ATTCAGAACATTTTTGTACCTEST: gi|6668150|gb|AW279601.1|AW279601
genomic: TCAGTACTCCAATCT-TCG-TTGTAAATGCAGCCTATGACT-CATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCT
EST: CAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|10255077|gb|BE822843.1|BE822843
genomic: CAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAANCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|7589195|gb|AW704974.1|AW704974
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|298163578|gb|HO012311.1|HO012311
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTCTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|5753462|gb|AI960749.1|AI960749
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATEST: gi|6341492|gb|AW164316.1|AW164316
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG ATTCAGAACATCTTTGTACCTGGCTCTGCTGATTCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
tggagatatccttctagtcttttactctaatcctcaagatattgctttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATAGCTGCAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAA
ttgcttt CT-rich tract
aagatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactcatgtcaaagatgttctcatttgatgttttaacctcttaagtggagatatccttctagtcttttactctaatcctcaagatattgctttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATAGCTGCAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -tcatgtc
- - - - - - - - - - - - -tgatgtt