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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactcattatgtatcatgaaccgtttagtagtgataattggaataccttgcaagttgttcaacttattgacaaaattatatttgacatctcttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTT

Basic information

species Glycine max
transcript GLYMA16G10880.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269443|gb|CA820506.1|CA820506
EST:     GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA                         GTATGGCTCTCTAACATTTTATGCACCCGGATGAC
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACC-GGATGAC
EST: gi|9258778|gb|BE346925.1|BE346925
EST:     GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA                         GTATGGTTCTCTAACATTNTATGCACCGGATGACAAGAAGTTTCCATCGGT
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: gi|5606958|gb|AI901056.1|AI901056
EST:     GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTACCAA                         GTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: gi|17962913|gb|BM269669.1|BM269669
EST:     GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA                         GTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: gi|15288120|gb|BI472011.1|BI472011
EST:     GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA                         GTATGGTTCTCTAACA
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACA
EST: gi|9204784|gb|BE331008.1|BE331008
EST:     GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA                         GTATGGTGCTCTAACATTATATGCACCGGATGACAAGAAGTTTCCATCGGT
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
EST: gi|20811436|gb|BQ295914.1|BQ295914
EST:     GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAA                         GTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT
genomic: GAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAgtacaaacaa ... cttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgcaagttgttcaacttattgacaaaattatatttgacatctcttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTT
                                          tctcttcactc  CT-rich tract
               aacttattgacaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aactcattatgtatcatgaaccgtttagtagtgataattggaataccttgcaagttgttcaacttattgacaaaattatatttgacatctcttcactcagGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG