1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagtcttttgacctcaatttagtgtttctgtttttgtgttattgtttttcttcttcctgaacaaatgcatctaatgttcttcacagGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCATTGCTGTTGTCTCCACAGTAATTGGTTATATTGCTAAGACTTACTTCA
species | Glycine max |
transcript | GLYMA16G05180.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAAGTTTCTTGGATCAGCTGTAGTTGGTCTG GTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCEST: gi|10237257|gb|BE806145.1|BE806145
genomic: TCAAGTTTCTTGGATCAGCTGTAGTTGGTCTGgttagtcttt ... ttcttcacagGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATC
EST: CTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTGTAGTTGGTCTG GTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCEST: gi|192334227|gb|FK026608.1|FK026608
genomic: CTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTGTAGTTGGTCTGgttagtcttt ... ttcttcacagGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATC
EST: TAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTGTAGTTGGTCTG GTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCEST: gi|27426582|gb|CA938102.1|CA938102
genomic: TAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTGTAGTTGGTCTGgttagtcttt ... ttcttcacagGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATC
EST: TAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTGTAGTTGGTCTG GTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATC
genomic: TAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTGTAGTTGGTCTGgttagtcttt ... ttcttcacagGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATC
ttttgtgttattgtttttcttcttcctgaacaaatgcatctaatgttcttcacagGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCATTGCTGTTGTCTCCACAGTAATTGGTTATATTGCTAAGACTTACTTCA
atctaat putative branch site (score: 3)
tgttcttc CT-rich tract
ttattgtttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtcttttgacctcaatttagtgtttctgtttttgtgttattgtttttcttcttcctgaacaaatgcatctaatgttcttcacagGTTGCTGTAGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCATTGCTGTTGTCTCCACAGTAATTGGTTATATTGCTAAGACTTACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT