1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatttttgtagcatcttgttttatattgattccttttttttttaacaggttttatagtgattcttgcttcttagaaatttttttttatgacaatttctcccttcttttggccatatctacagGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCGGAGTTGATGTGCTGCTTTGTTCCTGCTCCATTTAAGCAGTTTCTTGAAG
species | Glycine max |
transcript | GLYMA16G04580.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACACACTAGTATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAG GGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCGEST: gi|21638158|gb|BM108313.1|BM108313
genomic: ACACACTAGTATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAGgtatttttgt ... atatctacagGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCG
EST: ACACACTANTNTTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAG GGTGACAATAAAAGTTTTCTTGTTTGTAANAANAAAATGGCCACTTCCCCGEST: gi|18692787|gb|BM521635.1|BM521635
genomic: ACACACTAGTATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAGgtatttttgt ... atatctacagGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCG
EST: ACACACTAGTATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAG GGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCG
genomic: ACACACTAGTATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAGgtatttttgt ... atatctacagGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCG
ttcttagaaatttttttttatgacaatttctcccttcttttggccatatctacagGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCGGAGTTGATGTGCTGCTTTGTTCCTGCTCCATTTAAGCAGTTTCTTGAAG
tttctcccttcttttg CT-rich tract
agaaatttttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttgtagcatcttgttttatattgattccttttttttttaacaggttttatagtgattcttgcttcttagaaatttttttttatgacaatttctcccttcttttggccatatctacagGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCGGAGTTGATGTGCTGCTTTGTTCCTGCTCCATTTAAGCAGTTTCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG