Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaagtcctgcctatctattggtatccattctgcttttattttttggctttgtatcaatatatctttgctgtcttccagGAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAG

Basic information

species Glycine max
transcript GLYMA16G04400.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04400.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 3'ss of exon 10
---------------------gttaaagtcctgcctatctat--tggtatccattctgc--ttttatt----ttttggctttgt-atcaatatatctttgctgtct------tccagGAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAG
                     |||    || |   ||| | |     | || | | |    |||||||    |||| | || || |   | |||| |   || | |      | |||||||| ||   ||| || |||||||||||||||||  | ||||||||||||||||||
gtcagttttttagggggacatgttttgttctttaatatttgtaacaatctctactttatcattttattaatgtttttgtttggttaatgacatatttgaactatatatggtctgcagGAGCCTGAGACAGAGATCTGTGCAAGCATGTTGGATTCGTTGAATGAATGCATACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690810|gb|BG157146.1|BG157146
EST:     AACAGTTGTCTGATTATATAATACCAAATTTGGTGGAGGCTTTACACAAG                         GAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGC
genomic: AACAGTTGTCTGATTATATAATACCAAATTTGGTGGAGGCTTTACACAAGgttaaagtcc ... tgtcttccagGAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccattctgcttttattttttggctttgtatcaatatatctttgctgtcttccagGAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAG
                                      tctttgctgtcttcc  CT-rich tract
                        tttgtatcaatatat  TA-rich tract