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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctttcatttccttcatttttttaaactttagaaatgttttatttcaattctgcagccttctatcttgtgatatacagGACAGAGATATCATGCGGGTTCTTGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACA

Basic information

species Glycine max
transcript GLYMA16G04250.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04250.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ18418 (Selaginella moellendorffii), 3'ss of exon 9
gtaagcctttcatttccttcatttttttaaactttagaaatgttttatttcaattctgcagccttctatcttgtgatatacagGACAGAGATATCATGCGGGTTCTTGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACA
                 | | | ||| |  | |    ||    || |||     |||   |  || | | ||   |   ||||||| |||| |||||| | ||  |  | || || ||| | |||||||||||||| |||||||||||  || ||||||||||||| |||||  | |||||||
----------------gtacctctttgtcgattcatcaa----ttcattaaggctct-tggttttttgttttccta---acagGACCGAGAAATCATGAGAGTCATCCTCGAATGCTGCCTCCAAGAGAAAGTTTTCAACAAGTATTACGCACTGCTGGCTTCCAAATTATGTCACCATGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301276|gb|FG990196.1|FG990196
EST:     ATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAG                         GACAGAGATATCATGCGGGTTCTTGTGGAGTGTTGCTTGCAAGAGAAAGTT
genomic: ATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgtaagccttt ... tgatatacagGACAGAGATATCATGCGGGTTCTTGTGGAGTGTTGCTTGCAAGAGAAAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactttagaaatgttttatttcaattctgcagccttctatcttgtgatatacagGACAGAGATATCATGCGGGTTCTTGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACA
     ttagaaatgttttatt  TA-rich tract