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...ttgtcttaatgctttcagtttaatttttagccattaatttttattctgctttcattatgttttgattgaaattgacatattattatctgtcataatgcagAAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATACATCTGCGGCCCCAATAAGCCTTAAACCTCCTCCTTTTGATCGTCGCAA
species | Glycine max |
transcript | GLYMA16G01790.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGAAAAGCTTGACAAATACAACCCTTGGCTCAACATGAAGTGCACG AAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATAEST: gi|193324068|gb|FK288778.1|FK288778
genomic: ATGTTGAAAAGCTTGAC-AAT-CAACCCTTGGCTCAACATGAAGTGCACGgtccacattt ... cataatgcagAAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATA
EST: TGATGTTGAAAAGCTTGACAATCAACCCTTGGCTCAACATGAAGTGCACG AAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATAEST: gi|7588179|gb|AW703980.1|AW703980
genomic: TGATGTTGAAAAGCTTGACAATCAACCCTTGGCTCAACATGAAGTGCACGgtccacattt ... cataatgcagAAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATA
EST: TGATGTTGAAAAGCTTGACAATCAACCCTTGGCTCAACATGAAGTGCACG AAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATA
genomic: TGATGTTGAAAAGCTTGACAATCAACCCTTGGCTCAACATGAAGTGCACGgtccacattt ... cataatgcagAAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATA
ctgctttcattatgttttgattgaaattgacatattattatctgtcataatgcagAAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATACATCTGCGGCCCCAATAAGCCTTAAACCTCCTCCTTTTGATCGTCGCAA
aattgac putative branch site (score: 3)
ttttgattgaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtcttaatgctttcagtttaatttttagccattaatttttattctgctttcattatgttttgattgaaattgacatattattatctgtcataatgcagAAATGAATTCCATGCAAACTTCATCTGTAACTGATTTTAAGACATTTGATACATCTGCGGCCCCAATAAGCCTTAAACCTCCTCCTTTTGATCGTCGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - -tgctttc
- - - - - - - - - - - - - - agccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg