1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaccaaataacatggtcttcactaaatattgtggctttgaacaggttgtatattttattgtgttcacaaaaaccaatgttctcataattctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAACCATCTCTTGTCAATTTACCTTCCGTGGAGGAAGGTGGGCTCCTATTA
species | Glycine max |
transcript | GLYMA16G01660.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGTTATGTCAATTTTAGTTCAG AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAAEST: gi|207812003|gb|GD783588.1|GD783588
genomic: AAGTTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: TCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAG AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAAEST: gi|208074389|gb|GD868194.1|GD868194
genomic: TCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: CACGGCCGTATTCCCTTCACCAAGTGAAGTTTATGTCAATTTTAGTTCAG AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAAEST: gi|193530513|gb|FK484444.1|FK484444
genomic: CACGGCCGTATTCCCTTCACCAAGTGAAG-TTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: TTTTAGTTCAG AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAAEST: gi|193491513|gb|FK453111.1|FK453111
genomic: TTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: TCACGGCTGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAG AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
genomic: TCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
gttgtatattttattgtgttcacaaaaaccaatgttctcataattctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAACCATCTCTTGTCAATTTACCTTCCGTGGAGGAAGGTGGGCTCCTATTA
atattttattgtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaaataacatggtcttcactaaatattgtggctttgaacaggttgtatattttattgtgttcacaaaaaccaatgttctcataattctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAACCATCTCTTGTCAATTTACCTTCCGTGGAGGAAGGTGGGCTCCTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA