1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtagtagaataattatgtatacttgtgcgtagttatgttttgaattttgcagcaatttctattgcctttttattcattatgacctttttgtaatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGATTGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGT
species | Glycine max |
transcript | GLYMA16G01230.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAG GCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGEST: gi|7233734|gb|AW569078.1|AW569078
genomic: AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagact ... taatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
EST: TTGCTCCGGAG GCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGEST: gi|6951590|gb|AW423658.1|AW423658
genomic: TTGCTCCGGAGgtaaaagact ... taatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
EST: AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAG GCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
genomic: AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagact ... taatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
tttgcagcaatttctattgcctttttattcattatgacctttttgtaatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGATTGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGT
cctttttgt CT-rich tract
tttttattcattatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtagaataattatgtatacttgtgcgtagttatgttttgaattttgcagcaatttctattgcctttttattcattatgacctttttgtaatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGATTGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - -cttgtgc
- - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - -tgcagca