1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtataattctgtctttctagatatttgtctgtattctgtacttattatagtggaaacaaatgcttcattgttatgcttgagaattcctctgtctatcttgctcactctaggatgtattgtcatacttggctgattgaattgattatagtgtaaccttttttaccatctgatgcagCTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAG
species | Glycine max |
transcript | GLYMA16G00590.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AACAGGACCTGAAGGGCTCATTGTCAAGGCCGACATTGATGATTACTTGG CTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGEST: gi|208331851|gb|GE130688.1|GE130688
genomic: AACAGGACCTGAAGGGCTCATTGTCAAGGCCGACATTGATGATTACTTGGgtataattct ... tctgatgcagCTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAG
EST: CCGACATTGATGATTACTTGG CTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGEST: gi|4285811|gb|AI440957.1|AI440957
genomic: CCGACATTGATGATTACTTGGgtataattct ... tctgatgcagCTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAG
EST: TCAAGGCCGACATTGATGATTACTTGG CTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAG
genomic: TCAAGGCCGACATTGATGATTACTTGGgtataattct ... tctgatgcagCTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAG
catacttggctgattgaattgattatagtgtaaccttttttaccatctgatgcagCTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAG
ccttttttaccatct CT-rich tract
attgaattgattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataattctgtctttctagatatttgtctgtattctgtacttattatagtggaaacaaatgcttcattgttatgcttgagaattcctctgtctatcttgctcactctaggatgtattgtcatacttggctgattgaattgattatagtgtaaccttttttaccatctgatgcagCTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG