Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgaatctgtatataagattttgaacaacatcaatcttatgattttgattcaaaacctactttgtaaattgtattaactgtgtaatttgctctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACTATTACTCGGTGCATCTTCCATGAGGATGATGACAAGCTTCTTGAATACT

Basic information

species Glycine max
transcript GLYMA15G43170.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193475387|gb|FK441132.1|FK441132
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|207816684|gb|GD787077.1|GD787077
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACAC
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACAC
EST: gi|208292959|gb|GE089839.1|GE089839
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|208093390|gb|GD893577.1|GD893577
EST:     ACAACATCAATCTCCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAA
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAA
EST: gi|208322288|gb|GE124765.1|GE124765
EST:     GGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: GGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|207768691|gb|GD740502.1|GD740502
EST:     AATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: AATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|207765587|gb|GD736392.1|GD736392
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGNTCATGCTAGTGCTAGATACATCTAACACTGAACTGAACNC
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTA-CACTGAACTGAACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcaaaacctactttgtaaattgtattaactgtgtaatttgctctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACTATTACTCGGTGCATCTTCCATGAGGATGATGACAAGCTTCTTGAATACT
                         tattaac  putative branch site (score: 1)
                                       tttgctctttttac  putative PPT
              tttgtaaattgtatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagatgaatctgtatataagattttgaacaacatcaatcttatgattttgattcaaaacctactttgtaaattgtattaactgtgtaatttgctctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACTATTACTCGGTGCATCTTCCATGAGGATGATGACAAGCTTCTTGAATACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT