Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcctcattaaataagtatccttaatggatatctttctatgtcacatttcctttgccaatattcgattctccactgttaacttaatctaacctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGCATTCTTTGGATTTTTTGTGGTGCAGTGATCCTTCTTTTAACCACAAATA

Basic information

species Glycine max
transcript GLYMA15G42210.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42210.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 11
gtttcctcattaaataagtatccttaatggatatctttctatgtcacatttcctttgccaatattcgattctccactgttaacttaatctaacctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGCATTCTTTGGATTTTTTGTGGTGCAGTGATCCTTCTTTTAACCACAAATA
||| | |  ||||  ||      || ||  ||   |    |||| | || || |||   | | || |||  |  |||  ||| |  ||  |  | ||||||||| |  ||||| | |||| |    | ||||||| ||| ||||||||| | |||||||||||  ||||||| |||| ||||||| || || ||| ||| |
gttcctt--ttaagaaa------ttgatccatgattcagaatgttatatatctttt-ttattttttgatatttaactactaaat--attca--cattgtagGAGTTCACATGGTCAGGCCAACGCTTGAAGGCCTTCTATTCTGCTGGAGGAATTCTTTGGATAATTTGTGGAGCAGGGATCCTTTTTCTACCCAGAAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcctttgccaatattcgattctccactgttaacttaatctaacctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGCATTCTTTGGATTTTTTGTGGTGCAGTGATCCTTCTTTTAACCACAAATA
                                        atctaac  putative branch site (score: 2)
                                              cctttgt  CT-rich tract
                                ttaacttaatctaa  TA-rich tract