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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatttatttgatatggagagaatacaagtttcttggatgttgtgatatttttgttttgggtgctgggaaatgcttctgactgttgctttcaactcaactcctagcgtggtcatgacttcaaaattgtgtttaattgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG

Basic information

species Glycine max
transcript GLYMA15G40110.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40110.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G083716_T03 (Zea mays), 3'ss of exon 10
gtgagtcatttatttgatatggagagaatacaagtttcttggatgttgtgatatttttgttttgggtgctgggaaatgcttctgactgttgctttcaactcaactcctagcgtggtcatgacttcaaaattgtgtttaattgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                       |  || ||||  | ||   ||   || ||   ||||     ||     || ||     |  |   ||||| |    ||||||       |||     | |   || |    ||          ||||||||||||| || || |  || || || || |||||  | ||||| ||||| |||||||| ||||||||||| |||||||||| |||||||
-----------------------gtaaaaacaaaat-ctgcaatcccgtaattcatttgaaagaggatggaggcaacagagcacaaccttgctataggttcaact------atggctgacattctgaactgacatt----------agGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTGCTAAAAACGCCGGTGTCAATGGCAGTGTTGTCACTGAGAAG

upper sequence: GLYMA15G40110.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 3'ss of exon 11
gtgagtcatttatttgatatggagagaatacaagtttcttggatgttgtgatatttttgttttgggtgctgggaaatgcttctgactgttgctttcaactcaactcctagcgtggtcatgacttcaaaattgtgtttaattgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                                                                 ||| | || ||        | | |    ||     ||| |       |  |  ||  ||   || | | |   ||   |  |||||||||| || ||||| |||||||| || ||||||||| ||||||| || || || || |||||||| ||||| ||||||||||| ||||||
-----------------------------------------------------------------gtgattggcaaaatcaagaattttgaaattttttgcaaattgcttgctcttactgcattttcaactatttcccat--ctctagGTTGGAGCGGAAATTGTTAAAAGAGCACTGAGTTACCCTCTGAAATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAG

upper sequence: GLYMA15G40110.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G56500.1 (Arabidopsis thaliana), 3'ss of exon 11
gtgagtcatttatttgatatggagagaatacaagtttcttggatgttgtgatatttttgttttgggtgctgggaaatgcttc-tgactgttgctttcaactcaactcctagcgtggtcatgacttcaaaattgtgtttaattgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                                            |||     |     |||      || | ||||     | ||| ||  |  ||     |  || |  |      |   | || | ||||    ||||    | |||||||||||||| ||||| || | |||  | || |||||  |||| ||||| ||||| ||||||||||||||||| || |||||||||||||||
--------------------------------------------gttagtccagaagagttgcaca-gcagagaaagataacatgaatgaggagtttg--ccgtctgcgggttataacgccattttacaattcatcttaac--ctccagGTTGGAGCTGACATTGTTAAGAAAGCATTGAGCTACCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTGTCAGTGAGAAG

upper sequence: GLYMA15G40110.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 11
-------gtgagtcatttatttgatatggagagaatacaagtttcttggatgttgtgatatttttgttttgggtgctgggaaatgcttctgactgttgctttcaactcaactcc--tagcgtggtcatgacttcaaaattgtgtttaattg-ttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
        || | | | | ||  ||||||      | |||     |  | | | ||  |     |  ||||  |  ||   ||||  |   |    ||     |  |   |     ||  ||| | ||    | ||| | |  || ||||| ||||||||||||||||||||||| || |||||| | ||||||||| |||| |||||||||||||| |||||||| ||||| ||||| ||||||||||||
gtgatacttgtggc-tgtgttcaatatgggatttgtccaataccttgagttttggttttcccaatagtttgaatcatgctgaatgtgttcaaaatgtgtcaatatattggccaggatatagtgtttatcctcttaaagtggacttgaattgattgcagGTTGGAGCTGATATTGTCAAGAGAGCTTTGAGTTACCCTCTGAAGTTAATTGCCAAAAATGCTGGTGTTAATGGAAGTGTGGTCAGTGAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278868|gb|BI943136.1|BI943136
EST:     CATCANAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCCTTTGAA-TTAAT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCC-TTTGAAATTAAT
EST: gi|16278211|gb|BI942785.1|BI942785
EST:     CATCANAGGTGGACACAATCAAAGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGGTACCCTTTGGAATTAATT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16995951|gb|BM085323.1|BM085323
EST:     CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|31475719|gb|CD417747.1|CD417747
EST:     CATCAAAGGTGGACACCATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|207828846|gb|GD798493.1|GD798493
EST:     CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|208148111|gb|GD949727.1|GD949727
EST:     TAATGATGAAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAAT
genomic: TAATGATG-AAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAAT
EST: gi|26046015|gb|CA783382.1|CA783382
EST:     CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTG
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTG
EST: gi|16276840|gb|BI942072.1|BI942072
EST:     CATCANAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAANAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAA
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAA
EST: gi|298170123|gb|HO018747.1|HO018747
EST:     CATCAAAGGTGGACACAATCAAGGATAGCCTTGACAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|15589717|gb|BI674333.1|BI674333
EST:     CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|31309826|gb|CD395029.1|CD395029
EST:     CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|193403060|gb|FK369006.1|FK369006
EST:     CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAG
genomic: CATCAAAGGTGGACACAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... attgttgcagGTTGGAGCTGATATTGTGAAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaactcaactcctagcgtggtcatgacttcaaaattgtgtttaattgttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                                        gtttaat  putative branch site (score: 4)
                                aaaattgtgtttaatt  TA-rich tract