Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacactttttttttggcattagacaaagtcttaaagtgtaataatgattgtgctaaatactaatctagtatatgtatggacagATATTGCCAACTGTTCCATGGTACAAAGAACGTCTCCTCCTTCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATT

Basic information

species Glycine max
transcript GLYMA15G24080.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G24080.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 9
gtaacactttttttttggcattagacaaagtcttaaagtgtaataatgattgtgctaaatactaatctagtatatgtatggacagATATTGCCAACTGTTCCATGGTACAAAGAACGTCTCCTCCTTCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATT
||||   |    | |        |    | ||    |||  | || ||  ||  | |  || | || || ||| | | | |||||||| | || | ||||||||||||||||||||| ||||| |  ||| | ||||||||||| || |||||||| ||||| || || ||| |  | |||||  
gtaaggatggactctgtaggcctgctgcattcc---agttcagta-tgtatgaacca--tattgatgtattatttattttgacagATACTTCCTAGTGTTCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaaagtgtaataatgattgtgctaaatactaatctagtatatgtatggacagATATTGCCAACTGTTCCATGGTACAAAGAACGTCTCCTCCTTCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATT
                             tactaat  putative branch site (score: 1)
                         taaatactaatcta  TA-rich tract