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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcatttcactattttctagttatgttaaatatttaggggatgtaaccttccatttcatatctgtaattttgctcagtaagatatgcaggcttttgctcatacatatacaatggattggatgcttgtattctgtgtagagataatttacttgatactctgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTGTACAACCAACAATTGTTGAGATTTCTCCCGATGCTCCTGTAGTTAAAG

Basic information

species Glycine max
transcript GLYMA15G19670.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 10
gtatgtttcatttcactattttctagttatgttaaatatttaggggatgtaaccttccatttcatatctgtaattttgctcagtaagatatgcaggcttttgctcatacatatacaatggattggatgcttgtattctgtgtagagataatttacttgatactctgattat-cagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTGTACAACCAACAATTGTTGAGATTTCTCCCGATGCTCCTGTAGTTAAAG
                                                                           |  |  ||     |        ||||| |   |  |||   |       |  | || | |  || ||   | |||| ||     | |   |   || |||||||| || || || |  ||||| ||     |||| || |  ||||||||||| || |||||||| ||||||||||||||  ||||  |||||||||| |
--------------------------------------------------------------------------atctcaaagctgcttggattaatttttgatagaatttattttaccagaatgtcgttt-tttcttgggttttgttaatctaaactcttccaaggacattcagGGAGGAAATATTCTGATTGGTGGGTCCACTGTAGAATCTGAGGGAAATTTTGTGCAGCCAACAATCGTTGAGATTTCTCCAAATGCCTCTGTAGTTAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193511086|gb|FK468971.1|FK468971
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|20448705|gb|BQ252829.1|BQ252829
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|254334456|gb|GR844241.1|GR844241
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         G-AGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193615341|gb|FK564765.1|FK564765
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193472436|gb|FK438643.1|FK438643
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|192309267|gb|FG999144.1|FG999144
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|208314647|gb|GE112191.1|GE112191
EST:     TACTTCAGTGGAAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: TACTTCAGTGG-AAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193335148|gb|FK297944.1|FK297944
EST:     TGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCT
genomic: TGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCT
EST: gi|15813675|gb|BI785950.1|BI785950
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|207753779|gb|GD722341.1|GD722341
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: gi|193487181|gb|FK450902.1|FK450902
EST:     CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattggatgcttgtattctgtgtagagataatttacttgatactctgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTGTACAACCAACAATTGTTGAGATTTCTCCCGATGCTCCTGTAGTTAAAG
                                          ctctgat  putative branch site (score: 4)
                           ataatttacttgata  TA-rich tract