1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ataaatgcagctttcaaacatgtcttaatttgttctacttttttaaacctttatttccctgctcttcagaggccttattctgttcatattttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACCTTAGATATG
species | Glycine max |
transcript | GLYMA15G15960.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACEST: gi|37994708|gb|CF806333.1|CF806333
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACEST: gi|193320226|gb|FK284375.1|FK284375
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: CTCTTTCAGGTCATGATAACACTGTCTGTTCTGTGTTTACGCGGCCAACG GATCCCCAAGTTGTTACAGGTTCTCATGACACTACCATCAAGATGTGGGACEST: gi|193457505|gb|FK422333.1|FK422333
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACEST: gi|10254053|gb|BE821819.1|BE821819
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACEST: gi|193520683|gb|FK482048.1|FK482048
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: CTCTTTCAGGTCATGATAACACTGTCTGTTCTGTGTTTACGCGGCCAACG GATCCCCAAGTTGTTACAGGTTCTCATGACACTACCATCAAGATGTGGGAC
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
aacctttatttccctgctcttcagaggccttattctgttcatattttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACCTTAGATATG
ttttgttt CT-rich tract
ttcatattttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaatgcagctttcaaacatgtcttaatttgttctacttttttaaacctttatttccctgctcttcagaggccttattctgttcatattttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACCTTAGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG